Python Module Index

m
 
m
MDAnalysis
    MDAnalysis.analysis.align
    MDAnalysis.analysis.base
    MDAnalysis.analysis.contacts
    MDAnalysis.analysis.density
    MDAnalysis.analysis.diffusionmap
    MDAnalysis.analysis.distances
    MDAnalysis.analysis.encore.bootstrap
    MDAnalysis.analysis.encore.clustering.cluster
    MDAnalysis.analysis.encore.clustering.ClusterCollection
    MDAnalysis.analysis.encore.clustering.ClusteringMethod
    MDAnalysis.analysis.encore.confdistmatrix
    MDAnalysis.analysis.encore.covariance
    MDAnalysis.analysis.encore.dimensionality_reduction.DimensionalityReductionMethod
    MDAnalysis.analysis.encore.dimensionality_reduction.reduce_dimensionality
    MDAnalysis.analysis.encore.similarity
    MDAnalysis.analysis.encore.utils
    MDAnalysis.analysis.gnm
    MDAnalysis.analysis.hbonds.hbond_analysis
    MDAnalysis.analysis.hbonds.hbond_autocorrel
    MDAnalysis.analysis.helanal
    MDAnalysis.analysis.hole
    MDAnalysis.analysis.leaflet
    MDAnalysis.analysis.legacy.x3dna
    MDAnalysis.analysis.lineardensity
    MDAnalysis.analysis.nuclinfo
    MDAnalysis.analysis.pca
    MDAnalysis.analysis.polymer
    MDAnalysis.analysis.psa
    MDAnalysis.analysis.rdf
    MDAnalysis.analysis.rms
    MDAnalysis.analysis.waterdynamics
    MDAnalysis.auxiliary.__init__
    MDAnalysis.auxiliary.base
    MDAnalysis.auxiliary.core
    MDAnalysis.auxiliary.XVG
    MDAnalysis.coordinates.__init__
    MDAnalysis.coordinates.base
    MDAnalysis.coordinates.chain
    MDAnalysis.coordinates.core
    MDAnalysis.coordinates.CRD
    MDAnalysis.coordinates.DCD
    MDAnalysis.coordinates.DLPoly
    MDAnalysis.coordinates.DMS
    MDAnalysis.coordinates.GMS
    MDAnalysis.coordinates.GRO
    MDAnalysis.coordinates.INPCRD
    MDAnalysis.coordinates.LAMMPS
    MDAnalysis.coordinates.memory
    MDAnalysis.coordinates.MMTF
    MDAnalysis.coordinates.MOL2
    MDAnalysis.coordinates.null
    MDAnalysis.coordinates.PDB
    MDAnalysis.coordinates.PDBQT
    MDAnalysis.coordinates.PQR
    MDAnalysis.coordinates.TRJ
    MDAnalysis.coordinates.TRR
    MDAnalysis.coordinates.TRZ
    MDAnalysis.coordinates.XDR
    MDAnalysis.coordinates.XTC
    MDAnalysis.coordinates.XYZ
    MDAnalysis.core.__init__
    MDAnalysis.core.groups
    MDAnalysis.core.selection
    MDAnalysis.core.Timeseries
    MDAnalysis.core.topology
    MDAnalysis.core.topologyattrs
    MDAnalysis.core.topologyobjects
    MDAnalysis.core.universe
    MDAnalysis.exceptions
    MDAnalysis.lib ``lib`` collects independent code for re-use in MDAnalysis
    MDAnalysis.lib.distances
    MDAnalysis.lib.formats.libmdaxdr
    MDAnalysis.lib.log
    MDAnalysis.lib.mdamath
    MDAnalysis.lib.NeighborSearch
    MDAnalysis.lib.qcprot
    MDAnalysis.lib.transformations
    MDAnalysis.lib.util
    MDAnalysis.selections.base
    MDAnalysis.selections.charmm
    MDAnalysis.selections.gromacs
    MDAnalysis.selections.jmol
    MDAnalysis.selections.pymol
    MDAnalysis.selections.vmd
    MDAnalysis.topology.__init__
    MDAnalysis.topology.base
    MDAnalysis.topology.core
    MDAnalysis.topology.CRDParser
    MDAnalysis.topology.DLPolyParser
    MDAnalysis.topology.DMSParser
    MDAnalysis.topology.ExtendedPDBParser
    MDAnalysis.topology.GMSParser
    MDAnalysis.topology.GROParser
    MDAnalysis.topology.guessers
    MDAnalysis.topology.HoomdXMLParser
    MDAnalysis.topology.LAMMPSParser
    MDAnalysis.topology.MMTFParser
    MDAnalysis.topology.MOL2Parser
    MDAnalysis.topology.PDBParser
    MDAnalysis.topology.PDBQTParser
    MDAnalysis.topology.PQRParser
    MDAnalysis.topology.PSFParser
    MDAnalysis.topology.tables
    MDAnalysis.topology.TOPParser
    MDAnalysis.topology.tpr
    MDAnalysis.topology.tpr.obj
    MDAnalysis.topology.tpr.setting
    MDAnalysis.topology.tpr.utils
    MDAnalysis.topology.TPRParser
    MDAnalysis.topology.XYZParser
    MDAnalysis.units
    MDAnalysis.version
    MDAnalysis.visualization.streamlines
    MDAnalysis.visualization.streamlines_3D