======== Examples ======== MDAnalysis maintains a collection of Jupyter notebooks as examples of what the code can do. Each notebook can be downloaded from the source repository to run on your own computer, or viewed as an online tutorial on the user guide. .. toctree:: :maxdepth: 1 :caption: General quickstart constructing_universe transformations/README .. toctree:: :maxdepth: 2 :caption: Analysis analysis/alignment_and_rms/README analysis/distances_and_contacts/README analysis/trajectory_similarity/README analysis/structure/README analysis/reduced_dimensions/README analysis/polymers_and_membranes/README analysis/volumetric/README