.. -*- coding: utf-8 -*- .. _standard-selections: ========================================== Standard residues in MDAnalysis selections ========================================== .. _protein-selection: Proteins ======== The residue names listed here are accessible via the "protein" keyword in the :ref:`selections`. The below names are drawn from the CHARMM 27, OPLS-AA, GROMOS 53A6, AMBER 03, and AMBER 99sb*-ILDN force fields. .. include:: generated/selections/protein.txt ---------------- Protein backbone ---------------- Protein backbone atoms in MDAnalysis belong to a recognised protein residue and have the atom names: .. include:: generated/selections/protein_backbone.txt .. _nucleic-selection: Nucleic acids ============= The residue names listed here are accessible via the "nucleic" keyword in the :ref:`selections`. The below names are drawn from largely from the CHARMM force field. .. include:: generated/selections/nucleic.txt ---------------- Nucleic backbone ---------------- Nucleic backbone atoms in MDAnalysis belong to a recognised nucleic acid residue and have the atom names: .. include:: generated/selections/nucleic_backbone.txt .. _nucleobase-selection: ----------- Nucleobases ----------- Nucleobase atoms from nucleic acid residues are recognised based on their names in CHARMM. .. include:: generated/selections/base.txt -------------- Nucleic sugars -------------- Nucleic sugar atoms from nucleic acid residues are recognised by MDAnalysis if they have the atom names: .. include:: generated/selections/nucleic_sugar.txt