Index

B

bin_radii() (mdahole2.analysis.hole.HoleAnalysis method)

C

check_and_fix_long_filename() (in module mdahole2.analysis.utils) collect_hole() (in module mdahole2.analysis.utils)

create_vmd_surface() (in module mdahole2.analysis.utils) (mdahole2.analysis.hole.HoleAnalysis method)

D

delete_temporary_files() (mdahole2.analysis.hole.HoleAnalysis method)

E

environment variable PATH, [1]

G

gather() (mdahole2.analysis.hole.HoleAnalysis method)

guess_cpoint() (mdahole2.analysis.hole.HoleAnalysis method)

H

histogram_radii() (mdahole2.analysis.hole.HoleAnalysis method)

hole() (in module mdahole2.analysis.hole) HoleAnalysis (class in mdahole2.analysis.hole)

M

mdahole2.analysis.hole module mdahole2.analysis.templates module mdahole2.analysis.utils module

min_radius() (mdahole2.analysis.hole.HoleAnalysis method) module mdahole2.analysis.hole mdahole2.analysis.templates mdahole2.analysis.utils

O

over_order_parameters() (mdahole2.analysis.hole.HoleAnalysis method)

P

PATH, [1] plot() (mdahole2.analysis.hole.HoleAnalysis method) plot3D() (mdahole2.analysis.hole.HoleAnalysis method)

plot3D_order_parameters() (mdahole2.analysis.hole.HoleAnalysis method) plot_mean_profile() (mdahole2.analysis.hole.HoleAnalysis method) plot_order_parameters() (mdahole2.analysis.hole.HoleAnalysis method)

R

run() (mdahole2.analysis.hole.HoleAnalysis method)

run_hole() (in module mdahole2.analysis.utils)

S

SIMPLE2_RAD (in module mdahole2.analysis.templates)

W

write_simplerad2() (in module mdahole2.analysis.utils)